big-data

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Tony Elam	Kentucky	big-data data-management metadata professional-development
Alana Romanella	Campus Champions	affinity-group ai big-data community-outreach data-analysis data-science deep-learning documentation more...
Brian Gregor	Northeast, Campus Champions	big-data debugging gpu hardware job-sizing machine-learning matlab mpi more...
Bala Desinghu	ACCESS CSSN, Campus Champions, CAREERS, Northeast	ai anaconda api bash batch-jobs benchmarking big-data bioinformatics more...	affinity-group ai allocations-proposal amber anaconda archiving backup bash more...
Deborah Penchoff	Campus Champions	abstract ACCESS ACCESS-account adding-users affiliations ai allocation-management allocation-time more...
Dylan Perkins	RMACC, ACCESS CSSN	ACCESS-account big-data	ACCESS-website batch-jobs core-hours cpu-architecture data-science documentation open-ondemand pegasus more...
David Ryglicki		ai big-data computer-vision data-analysis deep-learning fortran generative-ai image-processing more...	ai astrophysics bash big-data computer-graphics computer-vision data-analysis data-science more...
Fernando Garzon	ACCESS CSSN	abstract ai aws bash batch-jobs big-data citation containers more...	ai aws azure bash batch-jobs big-data c c++ more...
Feseha Abebe-Akele	CCMNet	abstract ACCESS ACCESS-account ACCESS-allocations ACCESS-credits ACCESS-website account adding-users more...
Feng George Yu	Campus Champions	big-data data-management
Jordan Hayes	Campus Champions	acls administering-hpc amber anaconda api atlas aws bash more...
Jacob Pessin	Northeast	aws bash batch-jobs big-data bioinformatics cloud-storage cluster-support cyverse more...
Katia Bulekova	ACCESS CSSN, Campus Champions, CAREERS, Northeast, CCMNet	batch-jobs benchmarking big-data c c++ cuda data-analysis data-wrangling more...	batch-jobs benchmarking big-data c cloud-computing cuda data-analysis gcc more...
Thomas Langford	Campus Champions, CAREERS	big-data containers monte-carlo mpi parallelization particle-physics python quantum-mechanics more...
shuai liu	ACCESS CSSN	ai anaconda azure big-data bioinformatics biology containers data-analysis more...
Mohsen Ahmadkhani	CCMNet, ACCESS CSSN	ai bash batch-jobs big-data centos computer-vision conda containers more...	ACCESS administering-hpc ai allocation-management api arcgis aws azure more...
Maryam Taeb		abstract ai anaconda bash big-data community-outreach conda cybersecurity more...	abstract ai anaconda api bash big-data c citation more...
Neil McGlohon	CAREERS	ai anaconda bash benchmarking big-data conda distributed-computing machine-learning more...	distributed-computing python
Jeffrey J. Nuc…	CAREERS	archiving bash big-data cluster-support community-outreach cybersecurity deep-learning file-systems more...
Mahmoud Parvizi	Campus Champions	astrophysics big-data cloud-computing data-analysis data-science machine-learning particle-physics python more...	deep-learning management neural-networks professional-development training
Rebecca Belshe	Campus Champions, CCMNet	abstract ACCESS ACCESS-account ACCESS-allocations ACCESS-credits ACCESS-website affiliations affinity-group more...	astrophysics biology data-science genomics materials-science oceanography psychology
Rob Harbert	Northeast	anaconda batch-jobs big-data bioinformatics biology distributed-computing genomics gis more...
Grant Scott	Great Plains	ai aws bash big-data c++ compiling containers cuda more...	management
Simon Delattre		anaconda bash big-data conda data-transfer data-wrangling deep-learning machine-learning more...	bioinformatics
Suhong Li	CAREERS, ACCESS CSSN	anaconda big-data cleanup data-analysis data-wrangling github machine-learning natural-language-processing more...
Scott Valcourt	Northeast, Campus Champions	bash batch-jobs big-data compiling data-lifecycle data-management distributed-computing doi more...
Yun Shen	CAREERS, Northeast, ACCESS CSSN, CCMNet	big-data bioinformatics data-analysis data-science genomics open-ondemand programming Programming more...
Yongwook Song	Kentucky	azure big-data deep-learning machine-learning tensorflow

Users

Name	Roles	Skills	Interests
Abigail Waters	student facilitator student facilitator student champion	big-data image-processing	big-data image-processing r
Brian Gregor	mentor rcf	big-data debugging gpu hardware job-sizing machine-learning matlab mpi more...
Bala Desinghu	mentor researcher/educator rcf	ai anaconda api bash batch-jobs benchmarking big-data bioinformatics more...	affinity-group ai allocations-proposal amber anaconda archiving backup bash more...
Ethan Davis	student facilitator	bash batch-jobs big-data matlab python
Jacob Pessin	mentor	aws bash batch-jobs big-data bioinformatics cloud-storage cluster-support cyverse more...
Katia Bulekova	mentor rcf	batch-jobs benchmarking big-data c c++ cuda data-analysis data-wrangling more...	batch-jobs benchmarking big-data c cloud-computing cuda data-analysis gcc more...
Kristi Burkholder	researcher/educator	big-data data-management hpc-storage storage
Northeast Cyberteam	student facilitator	big-data
Rob Harbert	mentor	anaconda batch-jobs big-data bioinformatics biology distributed-computing genomics gis more...
safwan wshah	researcher/educator	ai big-data deep-learning image-processing machine-learning programming software-installation
Scott Valcourt	mentor researcher/educator rcf steering committee	bash batch-jobs big-data compiling data-lifecycle data-management distributed-computing doi more...
Alexander Williams	researcher/educator	bash big-data conda jupyterhub putty python react storage more...
Yves Dubief	researcher/educator	big-data molecular-dynamics mpi python	batch-jobs molecular-dynamics mpi programming programming-best-practices python
Yun Shen	mentor	big-data bioinformatics data-analysis data-science genomics open-ondemand programming Programming more...

Projects

Project Title	Project Institution	Project Owner	Tags	Status
Genetics and Big Data	UVM	Northeast Cyberteam	big-data	Complete
Using Genetic Algorithms and Support Vector Machines in Forest Mapping	University of Maine	Kasey Legaard	big-data, compiling, data-management, machine-learning, matlab, neural-networks, openstack, parallelization, programming, workflow	Complete
LOBO Fleet Monitoring	Darling Marine Center, University of Maine	Northeast Cyberteam	big-data, data-access-protocols, data-management, data-wrangling, metadata, file-formats, openstack, oceanography, python, software-installation, compiling, debugging	Complete
Analyzing Pathogenic Clinical Isolates Genomes to Identify Horizontal Gene Transfer of Antibiotic-Resistance Genes	University of Maine at Presque Isle	Larry Whitsel	big-data, bioinformatics, hpc-storage	Complete
Utility poles Geo-Localization and Risk Estimation using Deep Learning	University of Vermont	safwan wshah	ai, arcgis, big-data, conda, cuda, deep-learning, gis, gpu, machine-learning, pip, python, tensorflow, unix-environment	Complete
BTLE Beaconing to Track Objects	University of New Hampshire	Scott Valcourt	big-data, programming-best-practices, programming, hardware	Complete
Deep Learning High-Resolution Land Cover Mapping for Vermont	University of Vermont	Jarlath O'Neil-Dunne	arcgis, big-data, distributed-computing, gis, image-processing, machine-learning, python	Complete
Benchmarking Locally-Developed HPC Resources	University of New Hampshire	Scott Valcourt	backup, big-data, data-management, file-systems, hpc-cluster-build, hpc-operations, permissions, provisioning, schedulers, slurm, unix-environment	Complete
Student-Developed HPC Cluster for Active Learning	University of New Hampshire	Scott Valcourt	big-data, hardware, hpc-cluster-build, hpc-operations	Complete
Incorporating Hytools into the current image processing pipeline to produce better vegetation maps that will account for radiometric signals and will parallelize workflow	University of Maine at Fort Kent	Larry Whitsel	big-data, gis, hpc-operations, image-processing, python, r	Complete
Student-led Development of Open Source Materials for Hadoop	University of Maine Farmington	Northeast Cyberteam	big-data, ceph, data-wrangling, hadoop, storage	Complete
Genome Sequencing of the Bornean Rock Frog	Smith College	Lisa Mangiamele	big-data, genomics, bioinformatics	Complete
Big Data Portal For Sharing Real-world Bioinformatics Data Sets to the Public Domain	University of Maine, Augusta	Bruce Segee	big-data, bioinformatics, data-management, data-wrangling, hpc-storage, metadata, science-gateway, storage	Complete
Machine learning for material property prediction	University of Maine Orono	Northeast Cyberteam	big-data, data-wrangling, computational-chemistry, molecular-dynamics, machine-learning, python, gpu	Complete
Simulate and design “xenobots”, on the AMD platform	University of Vermont	Andrea Elledge	administering-hpc, amber, big-data, biology, file-transfer, github, slurm	Complete

Blog Entries

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Organizations

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ERN

Website

https://www.ernrp.org

big-data data-access-protocols data-compliance data-management data-analysis

ERN

Website

https://www.ernrp.org

big-data data-access-protocols

SGCI

Website

https://sciencegateways.org

big-data research-grants

US-RSE

Website

https://us-rse.org

big-data data-access-protocols data-management research-grants data-compliance

WCI

cloud-computing visualization big-data data-analysis deep-learning

Affinity Groups

Logo	Name	Description	Tags	Join
	DARWIN	DARWIN (Delaware Advanced Research Workforce and Innovation Network) is a big data and high performance computing system designed to catalyze Delaware research and education funded by a $1.4 million…	darwin big-data	Login to join
	Large Data Sets	For people who evaluate or use storage options for researchers with large data sets.	open-storage-network cloud-storage big-data data-transfer s3 ceph hpc-storage	Login to join

Announcements

Title	Date
Globus and ACCESS Simplify Data Management for Supercomputer Users	09/14/23

Upcoming Events & Trainings

No events or trainings are currently scheduled.

Topics from Ask.CI

Knowledge Base Resources

Title	Category	Tags	Skill Level
ACCESS HPC Workshop Series	Learning	deep-learning, machine-learning, neural-networks, big-data, tensorflow, gpu, training, openmpi, c, c++, fortran, openmp, programming, mpi, spark	Beginner, Intermediate
Awesome Jupyter Widgets (for building interactive scientific workflows or science gateway tools)	Learning	ai, computer-graphics, plotting, visualization, big-data, data-analysis, deep-learning, image-processing, machine-learning, monte-carlo, neural-networks, data-sharing, data-lifecycle, data-management, data-management-software, data-reproducibility, github, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, open-ondemand, science-gateway, c++, jupyterhub, python	Beginner, Intermediate, Advanced
Beautiful Soup - Simple Python Web Scraping	Tool	documentation, ai, big-data, data-sharing, data-transfer, data-wrangling	Beginner, Intermediate