genomics

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Alyssa Pivirotto	ACCESS CSSN, Campus Champions	bash bioinformatics biology conda data-analysis data-science genomics github more...	arcgis machine-learning
Carrie Brown	CAREERS, ACCESS CSSN, CCMNet	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...
Cindy Cheng	Campus Champions	abstract affiliations ai archiving artificial-intelligence azure backup benchmarking more...
David Carlson	ACCESS CSSN, Open OnDemand	bash bioinformatics biology gatk genomics ookami python r more...	ACCESS bash bioinformatics containers genomics
Daniel Morales	Campus Champions	ACCESS ACCESS-allocations ACCESS-credits adding-users allocation-management anaconda bash batch-jobs more...	ACCESS ACCESS-allocations allocation-management bioinformatics biology community-outreach conda deep-learning more...
Diana Toups Dugas	Campus Champions	bioinformatics biology genomics proposal-development research-facilitation software-carpentry training workforce-development
Feseha Abebe-Akele	CCMNet	abstract ACCESS ACCESS-account ACCESS-allocations ACCESS-credits ACCESS-website adding-users affiliations more...	ACES administering-hpc ai artificial-intelligence aws azure bash batch-jobs more...
Jordan Hayes	Campus Champions	acls administering-hpc amber anaconda api atlas aws bash more...
Jeremiah Olugbami		abstract affiliations bioinformatics biology chemistry citation genomics hardware more...
Konda Reddy Karnati	Campus Champions	ACCESS ACCESS-account artificial-intelligence bash big-data bioinformatics campus-champions centos more...
shuai liu	ACCESS CSSN	ai anaconda azure big-data bioinformatics biology containers data-analysis more...
Nil Mu	CCMNet	artificial-intelligence bioinformatics computer-science data-science genomics hpc-arch-and-perf hpc-cluster-architecture hpc-operations more...	artificial-intelligence bioinformatics genomics hpc-cluster-architecture performance-tuning workflow
Nicholas Panchy	Campus Champions	bash bioinformatics biology conda easybuild genomics modules open-ondemand more...
Russell Hofmann	ACCESS CSSN, CCMNet	computational-chemistry data-analysis data-science dft gaussian genomics gromacs kubernetes more...	administering-hpc cluster-support computational-chemistry data-analysis data-science dft gaussian genomics more...
Rob Harbert	Northeast	anaconda batch-jobs big-data bioinformatics biology distributed-computing genomics gis more...
Xiaoqin Huang	ACCESS CSSN	ACCESS-account ACCESS-credits adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...	ACCESS-credits ACCESS-website adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...
Vijay Shankar	Campus Champions	administering-hpc archiving backup bash big-data bioinformatics biology centos more...	ACCESS ansible aws azure campus-champions cgroups cifs cloud more...
Wesley Brashear	ACCESS CSSN, Campus Champions	bioinformatics biology genomics python r
William Lai	ACCESS CSSN	administering-hpc ai anaconda archiving backup bash bioinformatics biology more...	administering-hpc ai archiving bash benchmarking big-data bioinformatics biology more...
Yun Shen	CAREERS, Northeast, ACCESS CSSN, CCMNet	big-data bioinformatics data-analysis data-science genomics open-ondemand programming Programming more...

Users

Name	Roles	Skills	Interests
Matt Ferguson	researcher/educator	ACCESS ai anaconda bash bioinformatics biology c charmm more...	ACCESS ACCESS-account ACCESS-allocations ACCESS-credits ACCESS-website ai amber anaconda more...
Rob Harbert	mentor	anaconda batch-jobs big-data bioinformatics biology distributed-computing genomics gis more...
Yun Shen	mentor	big-data bioinformatics data-analysis data-science genomics open-ondemand Programming programming more...

Projects

Project Title	Project Institution	Project Owner	Tags	Status
Genome Sequencing of the Bornean Rock Frog	Smith College	Lisa Mangiamele	big-data, genomics, bioinformatics	Complete
Developing Portable and Reusable Computational Biology Modules		Chris Wilson	bioinformatics, data-reproducibility, docker, genomics	Complete

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Announcements

Title	Date
Ookami Webinar	02/14/24

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Topics from Ask.CI

Knowledge Base Resources

Title	Category	Tags	Skill Level
Biopython Tutorial	Learning	bioinformatics, genomics, python	Beginner, Intermediate, Advanced
MATLAB bioinformatics toolbox	Tool	visualization, data-analysis, bioinformatics, genomics, matlab	Beginner, Intermediate, Advanced
Samtools Documentation	Docs	documentation, data-analysis, bioinformatics, data-science, genomics	Beginner, Intermediate, Advanced