python

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Ami Gaspar	Campus Champions, Northeast	archiving backup cloud-computing community-outreach data-access-protocols data-compliance data-lifecycle data-management more...
Adrian Del Maestro	Northeast	batch-jobs c++ compiling data-management debugging gpu julia jupyterhub more...
Aaron Jezghani	Campus Champions	administering-hpc anaconda bash batch-jobs benchmarking c c++ checkpoint more...
Andrew Pasquale	ACCESS CSSN, At-Large, Campus Champions	ACCESS-website git opencv python sql
Bala Desinghu	CAREERS	ai big-data community-outreach computational-chemistry data-analysis dft image-processing machine-learning more...
Brian Gregor	Northeast, Campus Champions	big-data debugging gpu hardware job-sizing machine-learning matlab mpi more...
Michael Blackmon	Campus Champions	administering-hpc anaconda bash batch-jobs c c++ cgroups cluster-support more...
Brett Milash	RMACC	bioinformatics python
Kevin Bryan	Campus Champions	acls bash c c++ cluster-management compiling conda debugging more...	archiving data-transfer deep-learning professional-development
Benjamin Meyers	Campus Champions	bash batch-jobs cybersecurity data-science dependencies git machine-learning natural-language-processing more...	administering-hpc bash batch-jobs conda cybersecurity data-analysis data-science dependencies more...
Carrie Brown	Great Plains	bash batch-jobs conda containers data-wrangling distributed-computing fastx python more...
Carrie Brown	CAREERS, ACCESS CSSN	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...
Christina Divoll	Campus Champions, ACCESS CSSN	acls ADMIN and SUPPORT administering-hpc bash cluster-support DATA STORAGE MGMT and MVMT data-lifecycle data-management more...	CLOUD
Christopher Bl…	Campus Champions	anaconda aws azure bash benchmarking c c++ cloud-commercial more...
Cody Stevens	Campus Champions	administering-hpc anaconda archiving aws backup bash batch-jobs benchmarking more...
Cesar Sul	ACCESS CSSN, Campus Champions	astrophysics bash batch-jobs c git job-array job-submission lmod more...	anaconda astrophysics bash batch-jobs benchmarking c checkpoint containers more...
David Oury	Northeast	programming programming-best-practices python r tensorflow unix-environment
Balamurugan Desinghu	ACCESS CSSN, Campus Champions, CAREERS, Northeast	ai anaconda api bash batch-jobs benchmarking big-data bioinformatics more...	affinity-group ai allocations-proposal amber anaconda archiving backup bash more...
Davide Del Vento		c python quantum-computing	conda containers hpc-storage jupyterhub quantum-computing scheduling spack
Daniel Howard	RMACC, Campus Champions, ACCESS CSSN	ai bash c c++ computational-fluid-dynamics conda cuda data-provenance more...
Darshan Sarojini	ACCESS CSSN, Campus Champions	community-outreach computational-fluid-dynamics comsol mathematica matlab optimization paraview python more...	anaconda computational-fluid-dynamics comsol finite-element-analysis linear-programming monte-carlo optimization parameter-sweeps more...
Elie Alhajjar	ACCESS CSSN	biology c++ community-outreach data-science julia mathematica matlab professional-development more...	ai big-data biology c++ community-outreach data-analysis data-science deep-learning more...
Edwin Posada	Campus Champions	administering-hpc bash batch-jobs benchmarking c c++ cluster-management cluster-support more...
Eden Furtak-Cole	Campus Champions	bash c c++ compiling computational-fluid-dynamics finite-element-analysis git julia more...	bash c c++ data-analysis expanse git julia modules more...
Fernando Garzon	ACCESS CSSN	abstract ai aws bash batch-jobs big-data citation containers more...	ai aws azure bash batch-jobs big-data c c++ more...
George Young	CAREERS	ai conda machine-learning matlab project-management python	julia machine-learning matlab python r
Craig Gross	Campus Champions	bash c c++ conda data-analysis data-science git github more...
Ibrahim Sheikh	CAREERS	benchmarking community-outreach debugging deep-learning dependencies encryption geographic-information-system git more...	backup benchmarking community-outreach computational-chemistry deep-learning file-formats gamess geographic-information-system more...
Iman Rahbari	Campus Champions, ACCESS CSSN	bash computational-fluid-dynamics comsol data-analysis fortran machine-learning matlab modules more...	abaqus ai anvil aws bash batch-jobs bridges-2 computational-fluid-dynamics more...
Yu-Chieh Chi	Campus Champions	anaconda bash batch-jobs c c++ computational-chemistry containers cuda more...
James Deaton	Campus Champions, Great Plains, ACCESS CSSN	archiving bash cgroups community-outreach conda containers data-wrangling hpc-storage more...
Jordan Hayes	Campus Champions	acls administering-hpc amber anaconda api atlas aws bash more...
Jacob Pessin	Northeast	aws bash batch-jobs big-data bioinformatics cloud-storage cluster-support cyverse more...
Jason Wells	Campus Champions	administering-hpc api bash batch-jobs biology cluster-management cluster-support computational-fluid-dynamics more...
John Goodhue	CAREERS, Northeast	programming python sciencedmz storage
Juan Vanegas	Northeast	bash batch-jobs bioinformatics compiling conda environment-modules hpc-cluster-build hpc-operations more...
Jeffrey Weekley	Campus Champions	administering-hpc archiving biology community-outreach condo containers cybersecurity data-compliance more...
Jason Yalim	Campus Champions	administering-hpc bash benchmarking c c++ computational-fluid-dynamics cpu-bound data-analysis more...
Jacob Fosso Tande	Campus Champions	administering-hpc azure bash c++ cluster-support community-outreach compiling computational-chemistry more...
Kali McLennan	Campus Champions, Great Plains	acls bash cgroups cifs cluster-management cluster-support compiling conda more...
Keri Toksu	Northeast, Campus Champions	bash batch-jobs natural-language-processing programming python resources scheduling slurm more...
Katherine Nelson	Campus Champions, CAREERS, ACCESS CSSN	astrophysics bash batch-jobs cluster-support compiling conda debugging environment-modules more...	acls astrophysics bash batch-jobs c++ compiling conda debugging more...
Kenneth Bundy	CAREERS	anaconda aws azure bash batch-jobs c c++ cloud-commercial more...
Lakitha Wijeratne	TRECIS	image-processing machine-learning matlab python slurm	c++ image-processing machine-learning matlab neural-networks python slurm
Thomas Langford	Campus Champions, CAREERS	big-data containers monte-carlo mpi parallelization particle-physics python quantum-mechanics more...
Lauren Hill-Beaton	CAREERS	anaconda arcgis conda geographic-information-system netcdf ondemand pip programming more...	arcgis geographic-information-system python
shuai liu	ACCESS CSSN	ai anaconda azure big-data bioinformatics biology containers data-analysis more...
Martin Cuma	RMACC	bash batch-jobs c++ compiling debugging distributed-computing environment-modules job-sizing more...	bash batch-jobs c++ compiling comsol conda containers cuda more...
Michael Kyle	Campus Champions	bash cybersecurity python research-facilitation sql	anaconda arcgis bash community-outreach conda cybersecurity data-analysis data-lifecycle more...
Michael Puerrer	Campus Champions, Northeast	astrophysics bash benchmarking c c++ conda containers cuda more...
Maryam Taeb		abstract ai anaconda bash big-data community-outreach conda cybersecurity more...	abstract ai anaconda api bash big-data c citation more...
Nicholas Danes	Campus Champions, MINES	anaconda biology compiling computational-fluid-dynamics cpu-bound distributed-computing fortran job-array more...	ai aws azure benchmarking big-data c c++ deep-learning more...
Nick Dusek	Campus Champions	administering-hpc anaconda bash batch-jobs bioinformatics compiling containers data-transfer more...
Justin Oelgoetz	Campus Champions	abstract affiliations astrophysics bash benchmarking c c++ citation more...	administering-hpc ai amber astrophysics benchmarking c c++ charmm more...
Nicholas Panchy	Campus Champions	bash bioinformatics biology conda easybuild genomics modules ondemand more...
Mahmoud Parvizi	Campus Champions	astrophysics big-data cloud-computing data-analysis data-science machine-learning particle-physics python more...	deep-learning management neural-networks professional-development training
Mark Perri	Campus Champions	computational-chemistry docker gamess jetstream namd openstack programming python more...	computational-chemistry docker gamess jupyterhub molecular-dynamics namd python quantum-mechanics
Paul Rulis	Campus Champions	abstract affiliations ai bash batch-jobs c c++ checkpoint more...	abstract affiliations ai amber atlas bash batch-jobs benchmarking more...
Mike Renfro	Campus Champions	administering-hpc anaconda bash conda environment-modules fortran git github more...
Russell Hofmann	ACCESS CSSN	computational-chemistry data-analysis data-science dft gaussian genomics gromacs kubernetes more...	administering-hpc cluster-support computational-chemistry data-analysis data-science gaussian genomics gromacs more...
Rob Coyne	CAREERS	astrophysics python	astrophysics bash machine-learning mpi python scripting
Ron Rahaman	Campus Champions	anaconda bash batch-jobs benchmarking c c++ cluster-support compiling more...	containers cpu-architecture dependencies documentation gpu hpc-arch-and-perf programming-best-practices software-carpentry more...
Sean Anderson	Campus Champions	administering-hpc anaconda bash batch-jobs benchmarking cluster-support community-outreach compiling more...
Grant Scott	Great Plains	ai aws bash big-data c++ compiling containers cuda more...	management
Shawn Doughty	Campus Champions, Northeast	aws batch-jobs cgroups containers fastx file-systems globus gpu more...
Shane Sanders	Campus Champions	bioinformatics c c++ containers machine-learning programming python research-grants more...	archiving big-data data-analysis data-compliance data-lifecycle data-management data-reproducibility data-retention more...
Xiaoqin Huang	ACCESS CSSN	access-acount ACCESS-credits adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...	ACCESS-credits ACCESS-website adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...
Simon Delattre		anaconda bash big-data conda data-transfer data-wrangling deep-learning machine-learning more...	bioinformatics
Suhong Li	CAREERS, ACCESS CSSN	anaconda big-data cleanup data-analysis data-wrangling github machine-learning natural-language-processing more...
Soham Pal	Campus Champions	bash c++ conda file-formats git github github-pages jupyterhub more...
Spencer Pruitt	Northeast	batch-jobs computational-chemistry debugging distributed-computing hardware hpc-operations hpc-storage mpi more...
Sumit Saluja	Campus Champions	administering-hpc anaconda aws azure backup batch-jobs c c++ more...
Swabir Silayi	Campus Champions	amber anaconda bash batch-jobs benchmarking c c++ checkpoint more...	administering-hpc cluster-management
Shawn Sivy	Campus Champions, CAREERS	acls backup bash batch-jobs cifs compiling containers cuda more...
Steve Spicklemire	Campus Champions	c python react	aws big-data computational-chemistry cybersecurity data-analysis gce image-processing machine-learning more...
Tyler Burkett	Kentucky	aws bash c c++ containers cuda git github more...	networking quantum-mechanics
Timothy Middelkoop	Campus Champions, Great Plains, ACCESS CSSN	batch-jobs containers docker kubernetes python software-carpentry workforce-development
Wirawan Purwanto	Campus Champions, Northeast, ACCESS CSSN	bash batch-jobs c++ mpi python scripting	ai bash batch-jobs benchmarking big-data bioinformatics bridges-2 c more...
William Lai	ACCESS CSSN	administering-hpc ai anaconda archiving backup bash bioinformatics biology more...	administering-hpc ai archiving bash benchmarking big-data bioinformatics biology more...

Topics from Ask.CI

Affinity Groups

	Name	Description	Tags	Join
	AI Institutes Cyberinfrastructure	Gathering place for AI researchers to find curated information about using ACCESS resources for AI applications and research.	ai machine-learning gpu python	Login to join

Users

Name	Roles	Skills	Interests
Ami Gaspar	rcf	archiving backup cloud-computing community-outreach data-access-protocols data-compliance data-lifecycle data-management more...
Adrian Del Maestro	mentor researcher/educator	batch-jobs c++ compiling data-management debugging gpu julia jupyterhub more...
Andrew Pasquale	mentor	ACCESS-website git opencv python sql
Brian Gregor	mentor rcf	big-data debugging gpu hardware job-sizing machine-learning matlab mpi more...
Brendan Philbin	student facilitator	bash c++ cuda distributed-computing mathematica mpi parallelization programming more...	bash batch-jobs c++ cuda distributed-computing mathematica mpi parallelization more...
Christopher Gilbert	student facilitator	anaconda arcgis astrophysics community-outreach conda jupyterhub python quantum-mechanics more...
David Oury	mentor	programming programming-best-practices python r tensorflow unix-environment
Balamurugan Desinghu	mentor rcf	ai anaconda api bash batch-jobs benchmarking big-data bioinformatics more...	affinity-group ai allocations-proposal amber anaconda archiving backup bash more...
Daniel Evans	researcher/educator	c c++ cleanup compiling file-formats git programming project-management more...
Ethan Davis	student facilitator	bash batch-jobs big-data matlab python
George Avirappattu	researcher/educator	c++ deep-learning geographic-information-system image-processing java machine-learning python pytorch more...
Halina Vercess…	student facilitator	anaconda c c++ github java mathematica matlab neural-networks more...
Jack Boynton	student facilitator researcher/educator	ai anaconda api aws bash batch-jobs benchmarking c++ more...
Jesse Franklin	student facilitator	mathematica matlab python
Jonathan Blanchard	student facilitator mentee	benchmarking file-systems github github-pages gpu hardware image-processing machine-learning more...	benchmarking file-systems github github-pages gpu hardware image-processing machine-learning more...
Jacob Pessin	mentor	aws bash batch-jobs big-data bioinformatics cloud-storage cluster-support cyverse more...
John Goodhue	mentor steering committee	programming python sciencedmz storage
Juan Vanegas	mentor	bash batch-jobs bioinformatics compiling conda environment-modules hpc-cluster-build hpc-operations more...
Keri Toksu	mentor rcf	bash batch-jobs natural-language-processing programming python resources scheduling slurm more...
Michael Puerrer	rcf	astrophysics bash benchmarking c c++ conda containers cuda more...
Neelaza Dahal	researcher/educator	python
Shawn Doughty	mentor rcf	aws batch-jobs cgroups containers fastx file-systems globus gpu more...
Spencer Pruitt	mentor	batch-jobs computational-chemistry debugging distributed-computing hardware hpc-operations hpc-storage mpi more...
Tolu Oyeniyi	student facilitator	anaconda bash lmod matlab programming putty python r more...	ai azure cluster-support image-processing jupyterhub linear-programming python r
Tyler Bloom	student facilitator	bash batch-jobs benchmarking c++ github monte-carlo optimization programming-best-practices more...
Alexander Williams	researcher/educator	bash big-data conda jupyterhub putty python react storage more...
Wirawan Purwanto	mentor rcf	bash batch-jobs c++ mpi python scripting	ai bash batch-jobs benchmarking big-data bioinformatics bridges-2 c more...
Yating Fang	student facilitator	bash c c++ data-analysis deep-learning linear-programming machine-learning matlab more...	anaconda bash big-data c c++ conda cuda data-analysis more...
Yves Dubief	researcher/educator	big-data molecular-dynamics mpi python	batch-jobs molecular-dynamics mpi programming programming-best-practices python

CI Links

Title	Category	Tags	Skill Level
Advanced Mathematical Optimization Techniques	Learning	optimization, python	Beginner, Intermediate, Advanced
AHPCC documentary	Docs	login, batch-jobs, slurm, bash, ssh, python, mpi	Beginner, Intermediate
Applications of Machine Learning in Engineering and Parameter Tuning Tutorial	Learning	data-analysis, machine-learning, python	Beginner, Intermediate
Automated Machine Learning Book	Learning	ai, data-analysis, deep-learning, machine-learning, neural-networks, python, r	Intermediate, Advanced
Awesome Jupyter Widgets (for building interactive scientific workflows or science gateway tools)	Learning	ai, computer-graphics, plotting, visualization, big-data, data-analysis, deep-learning, image-processing, machine-learning, monte-carlo, neural-networks, data-sharing, data-lifecycle, data-management, data-management-software, data-reproducibility, github, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, ondemand, science gateway, c++, jupyterhub, python	Beginner, Intermediate, Advanced
Biopython Tutorial	Learning	bioinformatics, genomics, python	Beginner, Intermediate, Advanced
Cornell Virtual Workshop	Learning	performance-tuning, python, r, matlab, slurm, mpi, cuda, file-transfer, globus	Beginner, Intermediate, Advanced
CUDA Toolkit Documentation	Docs	documentation, c, c++, fortran, python	Intermediate, Advanced
Data Visualization tools for Python	Docs	documentation, python	Beginner, Intermediate
DeapSECURE – Data-Enabled Advanced Computational Training Platform for Cybersecurity Research and Education	Learning	ai, visualization, big-data, data-analysis, deep-learning, machine-learning, neural-networks, jekyll, batch-jobs, slurm, bash, ssh, technical-training-for-hpc, training, workforce-development, python, scikit-learn, cybersecurity	Beginner
Gentle Introduction to Programming With Python	Learning	python	Beginner
Globus Documentation	Docs	cloud-storage, data-sharing, data-management, data-management-software, data-transfer, data-wrangling, file-transfer, globus, s3, dtn, python, data-security, data-compliance, federated-authentication, secure-data-architecture	Beginner, Intermediate, Advanced
GPU Computing Workshop Series for the Earth Science Community	Learning	optimization, performance-tuning, profiling, parallelization, github, pytorch, tensorflow, oceanography, gpu, hpc-arch-and-perf, PROFESSIONAL and WORKFORCE DEVELOPMENT, technical-training-for-hpc, PROGRAMMING LANGUAGES FRAMEWORKS AND IDEs, c, c++, fortran, cuda, jupyterhub, programming, programming-best-practices, python	Beginner
Handwritten Digits Tutorial in PyTorch	Website	ai, visualization, deep-learning, image-processing, machine-learning, neural-networks, pytorch, python	Intermediate
How the Little Jupyter Notebook Became a Web App: Managing Increasing Complexity with nbdev	Learning	data-sharing, data-management-software, data-reproducibility, github, workflow, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, science gateway, software-carpentry, jupyterhub, programming, python	Beginner, Intermediate, Advanced
HPC University	Learning	python, r, matlab, mpi, compiling, debugging, professional-development	Beginner, Intermediate, Advanced
HPCwire	Website	documentation, bioinformatics, pytorch, data-science, hpc-operations, technical-training-for-hpc, programming, programming-best-practices, python	Beginner, Intermediate, Advanced
Intro to Statistical Computing with Stan	Docs	data-analysis, machine-learning, monte-carlo, python	Beginner, Intermediate
Introduction to Python for Digital Humanities and Computational Research	Docs	ai, big-data, data-analysis, deep-learning, data-science, python	Beginner
MDAnalysis - Python library for the analysis of molecular dynamics simulations	Tool	computational-chemistry, materials-science, python	Beginner, Intermediate, Advanced
NCSA HPC Training Moodle	Learning	performance-tuning, profiling, parallelization, lustre, technical-training-for-hpc, training, workforce-development, openmp, python, mpi, cybersecurity	Beginner, Intermediate
Official Documentation for PyTorch and NumPy	Docs	deep-learning, neural-networks, pytorch, python	Beginner
Official Python Documentation	Docs	documentation, python
Optimizing Research Workflows - A Documentation of Snakemake	Docs	documentation, data-analysis, data-reproducibility, workflow, bioinformatics, data-science, python	Intermediate, Advanced
Python	Learning	python	Beginner
Python Tools for Data Science	Video	ai, big-data, data-analysis, machine-learning, data-wrangling, data-science, technical-training-for-hpc, training, workforce-development, python, scikit-learn, sql	Intermediate
PyTorch Introduction	Website	deep-learning, machine-learning, neural-networks, pytorch, python	Intermediate
Quick and Robust Data Augmentation with Albumentations Library	Tool	deep-learning, python	Advanced
Recommended Libraries for Cyberinfrastructure Users Developing Jupyter Notebooks	Website	ai, big-data, data-analysis, machine-learning, data-sharing, data-lifecycle, data-management, data-management-software, data-reproducibility, data-wrangling, github-pages, workflow, astrophysics, data-science, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, science gateway, conda, jupyterhub, python	Beginner, Intermediate, Advanced
Reinforcement Learning For Beginners with Python	Video	deep-learning, machine-learning, tensorflow, training, programming-best-practices, python	Beginner
Research Software Development in JupyterLab: A Platform for Collaboration Between Scientists and RSEs	Learning	ai, visualization, big-data, data-analysis, deep-learning, machine-learning, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, ondemand, science gateway, c++, jupyterhub, python, r	Beginner, Intermediate
Science Gateway Tool/Web App Template (Jupyter Notebook + ipywidgets)	Learning	data-analysis, github, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, ondemand, science gateway, jupyterhub, python	Beginner
Scipy Lecture Notes	Learning	visualization, data-analysis, machine-learning, python	Beginner, Intermediate
Set Up VSCode for Python and Github	Learning	git, python
Setting up PyFR flow solver on clusters	Learning	faster, computational-fluid-dynamics, c++, cuda, python, mpi, software-installation	Advanced
Time-Series LSTMs Python Walkthrough	Website	ai, deep-learning, machine-learning, neural-networks, pytorch, python	Advanced
Using Dask on HPC Systems	Learning	technical-training-for-hpc, jupyterhub, python	Beginner, Intermediate
Using Linux commands in a python script (and the difference between the subprocess and os python modules)	Learning	programming, python	Beginner, Intermediate

Projects

Project Title	Project Institution	Project Owner	Tags	Status
A GIS based model for wildlife conservation in Sri Lanka	Bridgewater State University	Thilina Surasinghe	python, mpi	Halted
Machine learning for material property prediction	University of Maine Orono	Northeast Cyberteam	big-data, data-wrangling, computational-chemistry, molecular-dynamics, machine-learning, python, gpu	Complete
Uncertainty Quantification for Urban Air Quality Modeling in Clermont-Ferrand, France	Stonehill College	Janelle Hammond	monte-carlo, python	Complete
Understanding Mechanical Properties of Bio-interfaces with HPC Molecular Simulations	University of Vermont	Juan Vanegas	bioinformatics, computational-chemistry, gromacs, molecular-dynamics, mpi, python	Complete
LOBO Fleet Monitoring	Darling Marine Center, University of Maine	Northeast Cyberteam	big-data, data-access-protocols, data-management, data-wrangling, metadata, file-formats, openstack, oceanography, python, software-installation, compiling, debugging	Complete
Using Agent Based Models on small world networks to understand disease transmission	University of Vermont, work will be remote	Jane Molofsky	python	Complete
Incorporating Hytools into the current image processing pipeline to produce better vegetation maps that will account for radiometric signals and will parallelize workflow	University of Maine at Fort Kent	Larry Whitsel	big-data, geographic-information-system, hpc-operations, image-processing, python, r	Complete
Deep Learning High-Resolution Land Cover Mapping for Vermont	University of Vermont	Jarlath O'Neil-Dunne	arcgis, big-data, distributed-computing, geographic-information-system, image-processing, machine-learning, python	Complete
Utility poles Geo-Localization and Risk Estimation using Deep Learning	University of Vermont	safwan wshah	ai, arcgis, big-data, conda, cuda, deep-learning, geographic-information-system, gpu, machine-learning, pip, python, tensorflow, unix-environment	Complete
UVM Art + AI Research Group Phase 2 (2021)	University of Vermont	Jennifer Karson	ai, cuda, python	Complete

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