Featured Projects

Reviewing Applicants

Uncertainty Quantification for Urban Air Quality Modeling in Clermont-Ferrand, France

cluster, collaboration, hpc-getting-started, monte-carlo, python, simulations

Recruiting

UVM Art + AI Research Group Phase 2 (2021)

AI, cluster, collaboration, cuda, python, supercomputing, visualization

Recruiting

Big Data Portal For Sharing Real-world Bioinformatics Data Sets to the Public Domain

Data-facing, big-data, data-handling, data-wrangling, data-management, storage (d-facing), metadata, bioinformatics, science gateway, website, hpc-storage (s-facing)

Recruiting

Portal Development

community-outreach, documentation, professional-development, website, workforce-development

In Progress

Deep Learning High-Resolution Land Cover Mapping for Vermont

big-data, geographic-information-system, arcgis, image-processing, machine-learning, distributed-computing, parallelism, python

In Progress

LOBO Fleet Monitoring

cloud/vm, software-installation, openstack, compiling, debugging, python, cyberinfrastructure

In Progress

Grey matter density, heredity, and psychotic disorders with alcohol misuse: Moving toward new diagnostic conceptualization through biotypes.

In Progress

UVM Art and AI Initiative

website, visualization, image-processing

In Progress

Using distributed computing to equilibrate Monte Carlo simulations

quantum-mechanics, simulations, distributed-computing, hpc, mpi

In Progress

Transient cooling of composite spherical moving droplet at high temperature with phase change and non-homogeneous boundary conditions

openfoam, batch-jobs, job-sizing, open-on-demand, parallelism, parameter-sweeps, performance, performance-tuning, bash

In Progress

Genome Sequencing of the Bornean Rock Frog

big-data, bioinformatics, genomics

In Progress

A GIS based model for wildlife conservation in Sri Lanka

mpi, networking, performance, python

In Progress

Incorporating Hytools into the current image processing pipeline to produce better vegetation maps that will account for radiometric signals and will parallelize workflow

big-data, geographic-information-system, hpc-operations, image-processing, python, r, Researcher-facing

In Progress

Benchmarking Locally-Developed HPC Resources

account, backup, big-data, Data-facing, data-handling, file-system, hpc, hpc-cluster-build, hpc-getting-started, hpc-operations, permissions, provisioning, scheduler, slurm, unix-environment

In Progress

Facilitating Fusarium Oxysporum Computational Research

data-handling, data-wrangling, slurm, debugging, containers, desktops

In Progress

Student-led Development of Open Source Materials for Hadoop

big-data, data-handling, data-wrangling, storage (d-facing), ceph, hadoop, cyberinfrastructure

In Progress

Utility poles Geo-Localization and Risk Estimation using Deep Learning

AI, arcgis, big-data, conda, cuda, deep-learning, geographic-information-system, gpus, hpc, machine-learning, pip, python, tensorflow, unix-environment

In Progress

Light Propagation in a Temporal Focusing Microscope using Matlab

parallelization, vectorization, matlab

In Progress

AMD GPU-accelerated design tools for creating novel lifeforms

programming-for-hpc, supercomputing, support, training

Finishing Up

Data Visualizations Using the Microsoft HoloLens

graphics, hw-and-sw-integration, hpc, network, software-installation, compiling, debugging, os, internet, networking

Finishing Up

Unsupervised learning of topologically ordered phases of matter

gpus, hpc, quantum-mechanics, machine-learning

Finishing Up

Parallel computing for interactions between fluids and flexible structures with application to suspended longline aquaculture farms

performance, parallelism, programming, matlab, mpi, parallelization

Finishing Up

Using station data and downscaled reanalysis to assess the occurrence of extreme weather

data-handling

Complete

Research Computing "helpdesk"

website, programming

Complete

Data Presentation for the Living Bridge

data-handling, data-wrangling, storage (d-facing), hardware, cpus, hpc-storage (s-facing), vpn, ssh, distributed-computing, cyberinfrastructure

Complete

Creating Tailored Research Computing Environments

big-data, machine-learning, resources, containers, docker, python, r, cpus, gpus, parallelization

Complete

Student-Developed HPC Cluster for Active Learning

big-data, hardware, hardware-architecture, hpc-cluster-build, hpc-operations, hw-and-sw-integration

Complete

Machine learning for material property prediction

computational-chemistry, gpus, machine-learning, python

Complete

Individual Based Modeling of Diamondback Terrapins

Complete

Analyzing Pathogenic Clinical Isolates Genomes to Identify Horizontal Gene Transfer of Antibiotic-Resistance Genes

big-data, bioinformatics, Data-facing, hpc, hpc-storage (s-facing), Researcher-facing

Complete

Multiscale HPC Modeling, Tutorials and examples

data-handling, distributed-computing, gpus, mpi, visualization

Complete

C++/17/14 Migration of Path Integral Quantum Monte Carlo Software

hpc, software-installation, compiling, debugging, dependencies, performance, performance-tuning, simulations, quantum-mechanics, programming

Complete

The foundation of terrestrial life: Inferring a total-evidence timeline of vascular plant evolution

hpc

Complete

CI Learning Resource Repository

resources, cyberinfrastructure, professional-development

Complete

Tracing Oceanic Pathways using High Resolution Model Output

oceanography

Complete

Understanding Mechanical Properties of Bio-interfaces with HPC Molecular Simulations

simulations, molecular-dynamics, gromacs, bioinformatics, computational-chemistry, python, hpc, mpi

Complete

Using Agent Based Models on small world networks to understand disease transmission

python

Complete

Onboarding Interdisciplinary Scientists to a GPU Based Cluster in Vermont

hpc, deep-learning, programming-languages-and-software-support

Complete

Developing Computational Labs for Upper Level Physical Chemistry II Course

computational-chemistry, gaussian

Complete

BTLE Beaconing to Track Objects

big-data, internet, networking, programming-best-practices, programming, graphics, hardware, hardware-architecture, hw-and-sw-integration

Complete

Genetics and Big Data

big-data

Complete

Kerr Black Hole Gravitational Lensing

network, mpi, astrophysics

Complete

Large-area Enhanced Forest Inventory modeled on 3-D Airborne Laser Scanning data

data-handling, parallelization, performance, programming

Complete

Using Genetic Algorithms and Support Vector Machines in Forest Mapping

machine-learning, programming, matlab