Tag: 'batch jobs'

Students

Name	Institution	Interests
Joshua Gyllinsky	Joshua Gyllinsky	Admin accounts Cloud/VM Cloud aws azure comet osg gce moc cyverse containers Storage s3 ceph swift HPC network dtn firewall ib tcp sdn vpn scheduler condor pbs sge slurm storage acls permissions cifs privacy gpfs quota lustre nfs SoftwareInstallation Compiling debugging conda cuda parallelization vectorization dependencies OS jupyterhub profilling mpi Platform kubernetes openshift openstack pip rstudio-server tuning spark tensorflow DomainSpecific AI Astrophysics BioInformatics gatk trinity ddocent DeepLearning geographicinformationsystem arcgis ImageProcessing opencv Machine-Learning scikit-learn Molecular-Dynamics lammps namd gromacs amber charmm desmond NaturalLanguageProcessing Parametersweeps ParticlePhysics root Quantum-Mechanics gaussian Simulations VideoProcessing EndUser ClusterSupport file-transfer globus nomachine ondemand parallelization putty rdp samba ScienceDMZ sftp site-specific smb ssh vpn x11 DataManagement archive CUI data-lifecycle doi ELN metadata security storage SoftwareSupport bash comsol environment-modules mathematica matlab mpi python r sas scripting spss stata unclassified atlas backup batch jobs big data bu cgroups Computational-Chemistry containers cpus cyberInfrastructure CyberSecurity data handling data storage data wrangling desktops distributed computing fastx filesystem gpus graphics hadoop hardware hardware architecture harvard harvardssh HPC Cluster build hpc operations HPCs HTNs hw/sw integration identity internet job sizing julia linear programming machine learning natural language processing nese networking nx odyssey oodatlas parallelism performance performance tuning Personnel Resource Capacity Building professional development programming programming best practices provisioning resources scc scheduling scientific gateway screen security Security in CyberInfrastructure software software identity Testest tier 3 tmux unix environment visualization web xsede

Mentors

Name	Institution	Areas of HPC Expertise/Interests	E-mail
Shaohao Chen	Massachusetts Institute of Technology	containers SoftwareInstallation Compiling debugging cuda parallelization vectorization dependencies mpi tensorflow AI DeepLearning Machine-Learning scikit-learn Quantum-Mechanics Simulations parallelization SoftwareSupport bash matlab mpi scripting batch jobs gpus julia machine learning parallelism performance performance tuning programming unix environment xsede	chenshaohao@gmail.com
Shawn Doughty	Tufts University	accounts aws batch jobs cgroups containers cpus desktops fastx filesystem globus gpus hardware hardware architecture hpc operations hw/sw integration networking parallelization professional development programming programming best practices python scheduling screen singularity slurm ssh unix environment web xsede	shawn.doughty@tufts.edu
Jeff Dusenberry	University of Massachusetts Boston	batch jobs cpus cyberInfrastructure debugging gpus mpi parallelization sge slurm unix environment	jeff.dusenberry@umb.edu
Katia Oleinik	Boston University	sge Compiling debugging cuda parallelization vectorization r batch jobs big data bu data handling data wrangling gpus graphics performance tuning programming programming best practices scc visualization	koleinik@bu.edu
Jacob Pessin	Boston University	Cloud/VM Cloud aws osg gce cyverse s3 HPC scheduler condor sge storage privacy SoftwareInstallation parallelization OS jupyterhub profilling pip BioInformatics Molecular-Dynamics Parametersweeps Simulations ClusterSupport parallelization DataManagement metadata security storage bash python r scripting batch jobs big data data handling data storage data wrangling distributed computing job sizing performance scc scheduling unix environment xsede	jacob.pessin@gmail.com
Spencer Pruitt	Northeastern University	slurm debugging parallelization storage mpi python batch jobs Computational-Chemistry cpus data storage distributed computing hardware hpc operations performance programming scheduling screen unix environment	s.pruitt@northeastern.edu
Wirawan Purwanto	Old Dominion University	bash C++ linux mpi python scripting batch jobs	wpurwant@odu.edu
Juan Vanegas	University of Vermont	HPC slurm storage nfs Compiling conda jupyterhub pip BioInformatics Molecular-Dynamics gromacs Simulations ssh x11 bash environment-modules mpi python batch jobs HPC Cluster build hpc operations	jvanegas@uvm.edu
Scott Yockel	Harvard	batch jobs Computational-Chemistry cyberInfrastructure data storage globus job sizing nese odyssey scheduling slurm storage unix environment xsede	syockel@g.harvard.edu

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